PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G036700.1
Common NameB456_007G036700, LOC105802042
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 218aa    MW: 23913.1 Da    PI: 7.6152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G036700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.7e-052776154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        +r+ + erE+  R+++N+ f  L   l ++    ++ + Ka+iL +A++ +k+L
  Gorai.007G036700.1 27 KRVHKAEREKLKREHLNELFLDLANALDPN----QPNNGKASILCEATRLLKEL 76
                        79999**********************887....56799999*****9999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.83E-52476No hitNo description
SuperFamilySSF474591.03E-102591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.7982676IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-72695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGSETNAAVK TSVGRSCVPK TKGKVPKRVH KAEREKLKRE HLNELFLDLA NALDPNQPNN  60
GKASILCEAT RLLKELFGQI ESLKKENASL VSESHYVNVE KNELQEENST LETQIRELKS  120
EIGTRVAQCK PDLNEPPPLP SQFHGDHHPG LPAVEPVPQQ PSALLVVPIH PDIQTYPTPD  180
SGTQQQPAPK TNCVVSKPHA RYPTPADSWP SQLLGKQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488902.11e-158PREDICTED: transcription factor bHLH47
RefseqXP_012488903.11e-158PREDICTED: transcription factor bHLH47
RefseqXP_012488904.11e-158PREDICTED: transcription factor bHLH47
RefseqXP_012488905.11e-158PREDICTED: transcription factor bHLH47
RefseqXP_012488906.11e-158PREDICTED: transcription factor bHLH47
SwissprotQ9SN744e-65BH047_ARATH; Transcription factor bHLH47
TrEMBLA0A0D2SDI31e-158A0A0D2SDI3_G
STRINGGLYMA17G10740.12e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117202331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-66bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]